ythQ [2019-01-14 09:25:19]

similar to ABC transporter (membrane protein)

locus: BSU30000

pI: 10.04

mw: 44.89 kDa

protein length: 385 aa

gene length: 1155 bp

function: unknown

product: ABC transporter (membrane protein)

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.2|Exporters] → [category|SW 1.2.1.2.6|Exporters of unknown function]
• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 3,070,246 → 3,071,403

Expression and Regulation

Operons

• genes: [gene|47C1A154AF6F67CA507A9F4FEA9576E7131EFB6D|ythP]-[gene|3ACDFBD5615510FA015486C7A3C7023226EC3476|ythQ]
  description: [Pubmed|11866510]

  sigma factors

  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|11866510,12207695], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]

  regulation

  • expressed under conditions of cell wall stress ([protein|search|SigW]) [Pubmed|11866510,12207695]

Biological materials

Mutant

• MGNA-A818 (ythQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/818 NBRP B. subtilis, Japan]
• BKE30000 (Δ[gene|3ACDFBD5615510FA015486C7A3C7023226EC3476|ythQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCGAAAAAAGAGCGTACGCC, downstream forward: _UP4_TAAAAAACCCAAACGGCGAC
• BKK30000 (Δ[gene|3ACDFBD5615510FA015486C7A3C7023226EC3476|ythQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TCGAAAAAAGAGCGTACGCC, downstream forward: _UP4_TAAAAAACCCAAACGGCGAC

References

• 10092453,11866510,12207695